Table of Contents
Getting Started
Program MARK Overview
Overview
Background
Analysis Theory
Statistical Theory
Pertinent Literature
Relation to Other Programs
Program BROWNIE
Program CAPTURE
Program ESTIMATE
Program RELEASE
Design Matrix
Design Matrix
Design Matrix Default
Design Matrix Basics
Design Matrix Functions
Design Matrix Advanced
Design Matrix Advanced 2
Design Matrix Colors
Individual Covariates
Individual Covariates -- Missing Values
Label Columns
Pre-Defined Models
Reorder Columns
Retrieve Columns
Scaling Covariates
Standardize Individual Covariates
Design Matrix Commands
Design Matrix Commands
Add One Column
Add Multiple Columns
Clipboard, Paste
Continuous
Continuous Group Effect
Continuous Occasion Effect
Copy Multiple Columns
Copy One Column
Copy Value
Delete One Column
Delete Multiple Columns
Discrete Group Effect
Discrete Occasion Effect
Identity
Intercept
Insert One Column
Insert Multiple Columns
Label Columns
Multiply Columns
First Column Number
Second Column Number
Partial Continuous
Partial Continuous Group Effect
Partial Continuous Occasion Effect
Partial Discrete Group Effect
Partial Discrete Occasion Effect
Partial Identity
Partial Intercept
Paste Clipboard
Product of Columns
Retrieve Column from another Design Matrix
Rotate Column
Save Design Matrix
Zero One Column
Zero Multiple Columns
Zero Partial Column
New Data Initialization
Initial Values
Clear Time Intervals
Covariate Names
Default Covariate Names
Data Type
Model Structure
Change Data Type
Data Type Change
Barker Model
Robust Design Barker Model
Closed Captures Models
Heterogeneity Closed Captures Mh
Heterogeneity Closed Captures Mtbh
Huggins Models
Known Fate
Link-Barker
Multi-Strata Models
Change PIM Definitions
Multi-Strata Models with Live and Dead Encounters
Robust Design Model
Closed Robust-design Multi-strata Model
Open Robust-design Multi-Strata Model
Nest Survival
Occupancy Estimation
Occupancy Estimation Robust Design
POPAN Model
Encounter Histories File
Encounter Histories Format
Encounter Histories File View
Encounter Occasions
Group Names
Default Group Names
Individual Covariates
Limits
Number of Groups
Number of Individual covariates
Time Intervals
Parameter Index Matrices (PIM)
Parameter Matrices
Age Matrix
Maximum Age
All Different Matrix
Column Modification
Constant Matrix
Copy Matrix
Matrix to Copy or Exchange
Matrix to Copy
Copy PIM to Clipboard
Diagonal Modification
Diagonal Number
Diagonal Start Parameter Value
Exchange Matrices
Matrix to Exchange
Open PIM
Parameter Entry Box
Paste Clipboard into PIM
Pre-Defined Models
PIM Chart
PIM Decrement
PIM Increment
Renumber No Overlap
Renumber Overlap
Row Modification
Time Matrix
Time and Age Matrix
Known Problems
Known Problems
Results Browser Commands
Results Browser
Adjust Number Parameters
AICc
AICc Weight
ANODEV
Append Model
Beta VC Matrix
Bootstrap Data
Bootstrap Goodness-of-fit Procedure
Change Model Name
Chi-Square Probability
CHat
Copy Estimates Clipboard
Data Type Change
Delete Model
Delta QAICc
Deviance
Estimation Window
F Statistic
F Denominator DF
F Numerator DF
F Statistic Value
Input Data Summary
LR Model Select
Median chat
Model Averaging
Model Likelihood
Number of Parameters
Parameter Labels
Parameter Plots
Parameter Plots Add Series
Parameter Plots Parameter List
Profile Likelihood Confidence Intervals
QAICc
QAICc Weight
ReRun Model(s)
Residuals Plot
Retrieve Current Model
Retrieve Model from File
Results File
Run Models
Pre-Defined Models
File Models
Run Current Model
ReRun Model(s)
Run Saved Model Structure
Save Model Structure
Set Preferences
Undelete Model
Variance Components
Variance Components
Variance Components Design Matrix
Variance Components Parameter Indices
Run Window
Run Window
File Models
Fix Parameters
Clear Fixed Parameters
Entry Box Fixed Parameter
Function Evaluations
Individual Covariates and Real Estimates
Identifiable Parameters
Number Parameters CJS
Number Parameters Closed Captures
Number Parameters S f
Number Parameters S r
Initial Estimates
Link Functions
List Data
MCMC
MCMC Binary File
MCMC Burn In
MCMC Design Matrix
MCMC Diagnostics
MCMC Hyperdistributions
MCMC Prior Distributions
MCMC Random Seed
MCMC Samples
MCMC SAS code
MCMC Step Size
MCMC VCMatrix
Model Name
Multiple Models
Select All Models
Number of Parameters
Optimization Method
Penalty on Likelihood Function
Profile Likelihood Confidence Intervals
Real VC Matrix
Run Current Model
Run File Models
Run Multiple Models
Run Title
Save Model Structure
Set Number Parameters
Significant Digits
Standardize Individual Covariates
Variance Estimation
Simulation Capabilities
Bootstrap Data
Bootstrap Goodness-of-fit Procedure
CAPTURE Simulations
RELEASE Simulations
Simulation
Simulation Beta Values True Model
Simulation Estimation Model Specification
Simulation Individual Covariates
Simulation Model Specification
Simulation Release Numbers
Simulation Required Tasks
Simulation True Model Specification
Simulation of Robust Design Models
Miscellaneous
LaserLst
NotePad Window
File View
File Resize
File Open
File New
File Dialog Window
Optimization Exercise
Set Preferences
Stability of Program
Temporary Files
Window Manipulation
Window Cascade
Window Tile